#: Equal contribution; * : Corresponding author
25- M Kalantar, I Kalanther, S Kumar, EK Buxton, M Raeeszadeh-Sarmazdeh*, Elucidating key determinants of engineered scFv antibody in MMP-9 binding using high throughput screening and machine learning (2024), bioRxiv
24- E Taheri, M Raeeszadeh-Sarmazdeh, Effect of TIMPs and Their Minimally Engineered Variants in Blocking Invasion and Migration of Brain Cancer Cells (2024), biorXiv
23- Mert Onur Cakiroglu, Hasan Kurban, Parichit Sharma, M Oguzhan Kulekci, Elham Khorasani Buxton, Maryam Raeeszadeh-Sarmazdeh, Mehmet M Dalkilic, An extended de Bruijn graph for feature engineering over biological sequential data, (2024), Machine Learning: Science and Technology
22- Masoud Kalantar#, Gregory Hilpert#, Ethan Mosca, Maryam Raeeszadeh-Sarmazdeh*, Engineering metalloproteinase inhibitors: TIMPs or mAbs, that is the question, (2024) Current Opinion of Biotechnology
21- Arman Hosseini, Sachin Kumar, Kyle Hedin, Maryam Raeeszadeh-Sarmazdeh*, Engineering Minimal Tissue Inhibitors of Metalloproteinase Targeting MMP-3 and MMP-9 via Gene Shuffling and Yeast Surface Display, (2023) Protein Sci
20- Hannaneh Ahmadighadikolaei, Janet A. Lambert, Maryam Raeeszadeh-Sarmazdeh*, TIMP-1 Protects Tight Junctions of Brain Endothelial Cells From MMP-Mediated Degradation, (2023), Pharm Res
19- Hannaneh Ahmadighadikolaei, Evette S. Radisky, Maryam Raeeszadeh-Sarmazdeh*, Engineering selective TIMP-1 using counter-selective strategy, (2023) Methods in Mol Biol
18- Maryam Raeeszadeh-Sarmazdeh, Mathew Coban, Shivansh Mahajan, Alexandra Hockla, Banumathi Sankaran, Greg Downey, Derek C. Radisky, Evette S. Radisky, Engineering of tissue inhibitor of metalloproteinases TIMP-1 for fine discrimination between closely-related stromelysins MMP-3 and MMP-10, (2022) J. Biol. Chem
17- Mari Toumaian, Maryam Raeeszadeh-Sarmazdeh*, Engineering tissue inhibitor of metalloproteinases using yeast surface display, (2022) Methods in Molecular Biology
16- Alexander J. Bolt, Linh D. Do, Maryam Raeeszadeh-Sarmazdeh*, Bacterial Expression and Purification of Human Matrix Metalloproteinase-3 using Affinity Chromatography, J. Vis. Exp., accepted for publication
15- Elham Khorasani Buxton, Rushabh Patel, Mari R. Toumaian, Maryam Raeeszadeh-Sarmazdeh*, Application of Protein Language Models to Low-N Engineering of Metalloproteinase Inhibitors, IEEE CPS proceedings, 8th annual conference in Computational Science and Computational Intelligence (CSCI'21), 2021
14- Maryam Raeeszadeh-Sarmazdeh, Wilfred Chen, Recent Advances in Cell Surface Display Technologies for Directed Protein Evolution, book chapter, Protein Engineering: Tools and Applications, Wiley-VCH, July 2021
13- Maryam Raeeszadeh-Sarmazdeh*, Eric T. Boder*, Yeast Surface Display: New opportunities for a time-tested protein engineering system, Methods in Molecular Biology, Accepted for publication
12- Qing Sun# , Maryam Raeeszadeh-Sarmazdeh# , Shen-Long Tsai# , and Wilfred Chen, Strategies for Multienzyme Assemblies, Methods in Molecular Biology, Accepted for Publication
11- Maryam Raeeszadeh-Sarmazdeh*, Linh Do, Brianne Hritz, Metalloproteinases and Their Inhibitors: Potential for the Development of New Therapeutics, Cells, 2020.
10- Sara Shakibania, Lida Ghazanfari, Maryam Raeeszadeh-Sarmazdeh*, Mehrdad Khakbiz*, Medical Application of Biomimetic 4D Printing, Journal of Drug Development and Industrial Pharmacy, 12/2020; (doi:10.1080/03639045.2020.1862179)
9- Maryam Raeeszadeh-Sarmazdeh, Kerrie Greene, Banumathi Sankaran, Derek C. Radisky, Evette S. Radisky, Directed Evolution of Metalloproteinase Inhibitor (TIMP-1) Reveals Cooperation Between Domains in Matrix Metalloproteinase Recognition, Journal of Biological Chemistry, 2019.
8- Maryam Raeeszadeh-Sarmazdeh, Nikhil Patel, Sarah Cruise, Leila Owen, Hugh O’Neill, Eric T. Boder, Identifying Stable Fragments of Arabidopsis thaliana Cellulose Synthase Subunit 3 by Yeast Display, Biotechnology Journal, 09/2018, e1800353 (Journal Cover).
7- Evette S. Radisky, Maryam Raeeszadeh-Sarmazdeh, Derek C. Radisky: Therapeutic Potential of Matrix Metalloproteinase Inhibition in Breast Cancer. Journal of Cellular Biochemistry, 06/2017;
118(11):3531-3548.
6- Maryam Raeeszadeh-Sarmazdeh, Ranganath Parthasarathy, Eric T. Boder: Fine-tuning Sortase-mediated Immobilization of Protein Layers on Surfaces using Sequential Deprotection and Coupling. Biotechnology Progress, 02/2017; 33(3): 824-83.
5- Maryam Raeeszadeh-Sarmazdeh#, Emily Hartzell#, J. Vincent Price#, Wilfred Chen, Protein Nanoparticles as Multifunctional Biocatalysts and Health Assessment Sensors, Current Opinion in Chemical Engineering 08/2016; 13:109-118.
4- Heejae Kim, Ka‐Hei Siu, Maryam Raeeszadeh Sarmazdeh, Qing Sun, Qi Chen, Wilfred Chen: Bioengineering Strategies to Generate Artificial Protein Complexes. Biotechnology and Bioengineering 05/2015; 112(8).
3- Maryam Raeeszadeh-Sarmazdeh, Ranganath Parthasarathy, Eric T. Boder: Site-specific Immobilization of Protein Layers on Gold Surfaces via Orthogonal Sortases. Colloids and surfaces B: Biointerfaces 04/2015; 128:457-63.
2-Rosemary K. Le, Maryam Raeeszadeh-Sarmazdeh, Eric T. Boder, Paul D. Frymier: Sortase-Mediated Ligation of PsaE-Modified Photosystem I from Synechocystis sp. PCC 6803 to a Conductive Surface for Enhanced Photocurrent Production on a Gold Electrode. Langmuir 12/2014; 31(3).
1- Eric T. Boder, Maryam Raeeszadeh-Sarmazdeh, J Vincent Price: Engineering Antibodies by Yeast Display. Archives of Biochemistry and Biophysics 03/2012; 526(2):99-106.